Does the converter snout engage the crankshaft? How much clearance between the converter and the flexplate, when the converter is fully seated in the pump? It sounds like you could be pulling the converter too far forward, or the snout isn't seated in the crankshaft far enough.....the flexplate bolts were never designed to "align" the converter only fasten it the the "flexible" flexplate. The alignment part is done with the crankshaft pilot hole and converter snout.......if they are misaligned, they will get gyroscopic with increased rpm causing vibration.